Carter SL, Eklund AC, Kohane IS, Harris LN, Szallasi Z: A signature of chromosomal instability inferred from gene expression profiles predicts clinical outcome in multiple human cancers. Nat. Genet. 2006, 38: 1043-1048. 10.1038/ng1861
Article
Google Scholar
Russnes HG, Vollan HK, Lingjaerde OC, Krasnitz A, Lundin P, Naume B, Sørlie T, Borgen E, Rye IH, Langerød A, Chin SF, Teschendorff AE, Stephens PJ, Månér S, Schlichting E, Baumbusch LO, Kåresen R, Stratton MP, Wigler M, Caldas C, Zetterberg A, Hicks J, Børresen-Dale AL: Genomic architecture characterizes tumor progression paths and fate in breast cancer patients. Sci. Transl. Med 2010, 2: 38ra47. 10.1126/scitranslmed.3000611
Google Scholar
Micke P, Edlund K, Holmberg L, Kultima HG, Mansouri L, Ekman S, Bergqvist M, Scheibenflug L, Lamberg K, Myrdal G, Berglund A, Andersson A, Lambe M, Nyberg F, Thomas A, Isaksson A, Botling J: Gene copy number aberrations are associated with survival in histologic subgroups of non-small cell lung cancer. J. Thorac. Oncol. 2011, 6: 1833-1840. 10.1097/JTO.0b013e3182295917
Article
Google Scholar
Kurashina K, Yamashita Y, Ueno T, Koinuma K, Ohashi J, Horie H, Miyakura Y, Hamada T, Haruta H, Hatanaka H, Soda M, Choi YL, Takada S, Yasuda Y, Nagai H, Mano H: Chromosome copy number analysis in screening for prognosis-related genomic regions in colorectal carcinoma. Cancer Sci. 2008, 99: 1835-1840. 10.1111/j.1349-7006.2008.00881.x
Article
Google Scholar
Tan M, Yu D: Molecular mechanisms of erbB2-mediated breast cancer chemoresistance. Adv. Exp. Med. Biol. 2007, 608: 119-129. 10.1007/978-0-387-74039-3_9
Article
Google Scholar
Lucas JE, Kung HN, Chi JT: Latent factor analysis to discover pathway-associated putative segmental aneuploidies in human cancers. PLoS Comput. Biol.. 2010, 6: e1000920.
Google Scholar
Solimini NL, Xu Q, Mermel CH, Liang AC, Schlabach MR, Luo J, Burrows AE, Anselmo AN, Bredemeyer AL, Li MZ, Beroukhim R, Meyerson M, Elledge SJ: Recurrent hemizygous deletions in cancers may optimize proliferative potential. Science 2012, 337: 104-109. 10.1126/science.1219580
Article
Google Scholar
Tang X, Lucas JE, Chen JL, LaMonte G, Wu J, Wang MC, Koumenis C, Chi JT: Functional interaction between responses to lactic acidosis and hypoxia regulates genomic transcriptional outputs. Cancer Res. 2012, 72: 491-502. 10.1158/0008-5472.CAN-11-2076
Article
Google Scholar
da Huang W, Sherman BT, Lempicki RA: Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res 2009, 37: 1-13. 10.1093/nar/gkn923
Article
Google Scholar
Tomlins SA, Mehra R, Rhodes DR, Cao X, Wang L, Dhanasekaran SM, Kalyana-Sundaram S, Wei JT, Rubin MA, Pienta KJ, Shah RB, Chinnaiyan AM: Integrative molecular concept modeling of prostate cancer progression. Nat. Genet. 2007, 39: 41-51. 10.1038/ng1935
Article
Google Scholar
Zheng Q, Wang XJ: GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis. Nucleic Acids Res 2008, 36: W358-W363. 10.1093/nar/gkn276
Article
Google Scholar
da Huang W, Sherman BT, Lempicki RA: Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4: 44-57.
Article
Google Scholar
Parkin DM, Bray F, Ferlay J, Pisani P: Global cancer statistics, 2002. CA. Cancer. J. Clin. 2005, 55: 74-108. 10.3322/canjclin.55.2.74
Article
Google Scholar
Farazi PA, DePinho RA: Hepatocellular carcinoma pathogenesis: from genes to environment. Nat. Rev. Cancer 2006, 6: 674-687. 10.1038/nrc1934
Article
Google Scholar
Schlaeger C, Longerich T, Schiller C, Bewerunge P, Mehrabi A, Toedt G, Kleeff J, Ehemann V, Eils R, Lichter P, Schirmacher P, Radlwimmer B: Etiology-dependent molecular mechanisms in human hepatocarcinogenesis. Hepatology Feb 2008, 47: 511-520.
Article
Google Scholar
Patil MA, Gutgemann I, Zhang J, Ho C, Cheung ST, Ginzinger D, Li R, Dykema KJ, So S, Fan ST, Kakar S, Furge KA, Buttner R, Chen X: Array-based comparative genomic hybridization reveals recurrent chromosomal aberrations and Jab1 as a potential target for 8q gain in hepatocellular carcinoma. Carcinogenesis 2005, 26: 2050-2057. 10.1093/carcin/bgi178
Article
Google Scholar
Zender L, Spector MS, Xue W, Flemming P, Cordon-Cardo C, Silke J, Fan ST, Luk JM, Wigler M, Hannon GJ, Mu D, Lucito R, Powers S, Lowe SW: Identification and validation of oncogenes in liver cancer using an integrative oncogenomic approach. Cell 2006, 125: 1253-1267. 10.1016/j.cell.2006.05.030
Article
Google Scholar
Zender L, Xue W, Zuber J, Semighini CP, Krasnitz A, Ma B, Zender P, Kubicka S, Luk JM, Schirmacher P, McCombie WR, Wigler M, Hicks J, Hannon GJ, Powers S, Lowe SW: An oncogenomics-based in vivo RNAi screen identifies tumor suppressors in liver cancer. Cell 2008, 135: 852-864. 10.1016/j.cell.2008.09.061
Article
Google Scholar
Roessler S, Long EL, Budhu A, Chen Y, Zhao X, Ji J, Walker R, Jia HL, Ye QH, Qin LX, Tang ZY, He P, Hunter KW, Thorgeirsson SS, Meltzer PS, Wang XW: Integrative genomic identification of genes on 8p associated with hepatocellular carcinoma progression and patient survival. Gastroenterology 2012, 142: 957-966. 10.1053/j.gastro.2011.12.039
Article
Google Scholar
Flicek P, Amode MR, Barrell D, Beal K, Brent S, Carvalho-Silva D, Clapham P, Coates G, Fairley S, Fitzgerald S, Gil L, Gordon L, Hendrix M, Hourlier T, Johnson N, Kähäri AK, Keefe D, Keenan S, Kinsella R, Komorowska M, Koscielny G, Kulesha E, Larsson P, Longden I, McLaren W, Muffato M, Overduin B, Pignatelli M, Pritchard B, Riat HS: Ensembl 2012. Nucleic Acid Res 2012, 40: D84-D90. 10.1093/nar/gkr991
Article
Google Scholar
Olshen AB, Venkatraman ES, Lucito R, Wigler M: Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics 2004, 5: 557-572. 10.1093/biostatistics/kxh008
Article
MATH
Google Scholar
Levrero M: Viral hepatitis and liver cancer: the case of hepatitis C. Oncogene 2006, 25: 3834-3847. 10.1038/sj.onc.1209562
Article
Google Scholar
Kremsdorf D, Soussan P, Paterlini-Brechot P, Brechot C: Hepatitis B virus-related hepatocellular carcinoma: paradigms for viral-related human carcinogenesis. Oncogene 2006, 25: 3823-3833. 10.1038/sj.onc.1209559
Article
Google Scholar