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Table 2 The SFHs of which copy number status were associated with patient survival

From: Identification of genomic functional hotspots with copy number alteration in liver cancer

Chr Start pos End pos p value   Presented gene set Number of overlapped genes
Gain       
 19 41.38 41.63 2.6E-04 mf Oxygen binding 2
 19 43.23 44.29 0.001 bp Defense response 4
 19 54.72 55.11 0.002 bp Defense response 6
 19 54.72 55.11 0.002 bp Cell surface receptor linked Signaling pathway 6
 19 40.09 40.23 0.003 mf Lysophospholipase activity 2
 19 40.09 40.23 0.003 mf Carboxylesterase activity 2
 19 39.41 39.52 0.004 cc SCF ubiquitin ligase complex 2
 19 39.41 39.52 0.004 mf Glycoprotein binding 2
 19 51.63 52.15 0.007 mf Sugar binding 9
 19 54.78 55.38 0.007 bp Regulation of immune response 8
 19 51.63 52.27 0.007 bp Cell adhesion 11
 19 42.18 44.32 0.007 cc Anchored to membrane 9
 19 54.72 55.55 0.007 mf Transmembrane receptor activity 8
 19 54.80 55.30 0.007 mf Antigen binding 5
 19 54.78 55.42 0.007 bp Cellular defense response 5
 19 54.72 55.55 0.007 cc Integral to plasma membrane 12
 19 58.55 59.08 0.007 bp Viral reproduction 7
 19 54.78 55.40 0.007 bp Immune response 6
 19 50.86 51.59 0.008 mf Peptidase activity 17
 19 45.41 45.45 0.008 mf Lipid transporter activity 2
Loss       
 8 11.83 12.18 2.4E-04 bp Defense response to bacterium 4
 4 55.10 55.99 0.001 bp Vascular endothelial growth Factor receptor signaling pathway 2
 4 55.10 55.99 0.001 mf Growth factor binding 2
 8 22.88 23.08 0.001 mf Caspase activator activity 2
 8 22.30 23.02 0.002 bp Apoptosis 5
 4 74.61 74.97 0.003 bp Inflammatory response 5
 8 26.37 27.47 0.004 cc Growth cone 3
 8 26.37 27.32 0.004 bp Response to cocaine 2
 8 22.01 23.08 0.005 bp Cellular response to mechanical stimulus 3
 4 68.69 69.36 0.006 mf Serine-type endopeptidase activity 5
 4 68.69 69.36 0.006 bp Proteolysis 5
 4 68.69 69.36 0.006 mf Peptidase activity 5
 4 70.86 71.40 0.007 bp Biomineral tissue development 5
 4 71.06 71.47 0.007 bp Odontogenesis of dentine-containing tooth 3
 4 74.26 74.85 0.007 cc Platelet alpha granule lumen 3
 4 74.26 74.85 0.007 bp Platelet degranulation 3
 4 76.92 76.94 0.008 bp Defense response to virus 2
 4 74.70 75.32 0.008 bp Cell-cell signaling 4
 8 38.13 38.33 0.008 bp Cell growth 2