Table 5 Average CPU time for finding the structural alignment of RNAs containing pseudoknots
From: Efficient Alignment of RNAs with Pseudoknots Using Sequence Alignment Constraints
Profile-csHMM | PSTAG | |||
|---|---|---|---|---|
M -constraint | Original | Proposed | ||
Time (sec) | Time (sec) | Time (sec) | Time (sec) | |
Corona_pk3 | 9.37 | 0.71 | 0.23 | 19.65 |
HDV_ribozyme | 10.30 | 1.03 | 0.13 | 158.77 |
Tombus_3_IV | 6.99 | 0.35 | 0.07 | 193.06 |
Flavi_pk3 | 13.31 | 3.96 | 0.35 | N/A |