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Table 9 Conditional probability tables for gene nodes of \(\mathcal {M}_{\text {PBK+EI}}\)

From: A pedagogical walkthrough of computational modeling and simulation of Wnt signaling pathway using static causal models in MATLAB

  

Conditional probability table for nodes

Node

Parents

Cpt values rep.

L E F1

Sample

[0.84 0.16; 0.16 0.84] T

MYC

Sample,

[0.94 0.89 0.78 0.31;

 

TRCMPLX

0.06 0.11 0.22 0.69] T

C C N D1

Sample,

[0.95 0.89 0.81 0.28;

 

TRCMPLX

0.06 0.11 0.18 0.72] T

C D44

Sample,

[0.93 0.90 0.67 0.42;

 

TRCMPLX

0.07 0.10 0.33 0.58] T

D K K1

Sample,

[0.95 0.93 0.07 0.05 0.77 0.60 0.40 0.23;

 

M e D K K1,

0.05 0.07 0.93 0.95 0.23 0.40 0.60 0.76] T

 

TRCMPLX

 

D K K2

Sample

[0.40 0.60; 0.60 0.40] T

D K K3-1

Sample

[0.36 0.64; 0.64 0.36] T

D K K3-2

Sample

[0.56 0.44; 0.44 0.56] T

D K K4

Sample,

[0.94 0.88 0.82 0.28;

 

TRCMPLX

0.06 0.11 0.18 0.72] T

D A C T1

Sample,

[0.56 0.74 0.26 0.44;

 

M e D A C T1

0.44 0.26 0.74 0.56] T

D A C T2

Sample,

[0.60 0.71 0.29 0.40;

 

M e D A C T2

0.40 0.29 0.71 0.60] T

D A C T3

Sample,

[0.88 0.88 0.12 0.88 0.88 0.88 0.12 0.88;

 

H3K27m e3,

0.12 0.12 0.88 0.12 0.12 0.12 0.88 0.12] T

 

H3K4m e3

 

S F R P1

Sample,

[0.88 0.98 0.02 0.12 0.20 0.96 0.04 0.80;

 

M e S F R P1,

0.12 0.02 0.98 0.88 0.80 0.04 0.96 0.20] T

 

TRCMPLX

 

S F R P2

Sample,

[0.31 0.88 0.11 0.69;

 

M e S F R P2

0.69 0.11 0.89 0.31] T

S F R P3

Sample

[0.20 0.80; 0.80 0.20] T

S F R P4

Sample,

[0.71 0.60 0.40 0.29;

 

M e S F R P4

0.29 0.40 0.60 0.71] T

S F R P5

Sample,

[0.31 0.89 0.11 0.69;

 

M e S F R P5

0.69 0.11 0.89 0.31] T

W I F1

Sample,

[0.96 0.91 0.09 0.04 0.85 0.47 0.56 0.15;

 

M e W I F1,

0.04 0.09 0.91 0.96 0.15 0.53 0.47 0.85] T

 

TRCMPLX

 
  1. The state of the gene nodes remains [ia a], i.e., “ia” - inactive or “a” - active [ia a]. Note that these values are from one iteration of the 2-holdout experiment