|
Number of aligned genes with mismatches
|
---|
Sequences of shRNA-coding DNA
|
0a
|
1a
|
2a
|
3a
|
---|
GGTAGCTCGTTAATTTAAT
|
0
|
0
|
1
|
3
|
GAATTCCGCGGTACGGGGG
|
0
|
0
|
0
|
6
|
GAATGCAGCAGGAGGGAGG
|
0
|
1
|
8
|
278
|
GAACTGGACGCAGGCCTAT
|
0
|
0
|
2
|
53
|
GACTAGTCTACTTCCTTAG
|
0
|
0
|
0
|
31
|
GCGATCTCTACCACCTGGC
|
0
|
0
|
4
|
79
|
GCGTAATCGGGCGAATAAC
|
0
|
0
|
0
|
0
|
GATAGTGCACGTTGAAACA
|
0
|
0
|
1
|
38
|
GTAGGGGGACCTAGAACAT
|
0
|
0
|
2
|
20
|
GACAAACCCTGCCTAGTTA
|
0
|
0
|
0
|
17
|
GGATCCGAGTGCACCTAAA
|
0
|
0
|
0
|
28
|
GAAGTAATGCGCTCGATCC
|
0
|
0
|
1
|
13
|
GCCACGTATGGCCGTACTG
|
0
|
0
|
0
|
10
|
GCACAATGTAAAAAGAATA
|
0
|
2
|
5
|
131
|
GAGCCAGTAAAAGAATATC
|
0
|
1
|
4
|
55
|
GTGCACTACTCGCAGTGGG
|
0
|
0
|
2
|
34
|
GTTCCTAGACTTCAAATAA
|
0
|
0
|
2
|
53
|
GACCTACCCATGTAGCAAG
|
0
|
0
|
0
|
43
|
GAGAAGGCGTCTCCGGAGA
|
0
|
0
|
4
|
82
|
GAGGAATGATATGGCCTTG
|
0
|
0
|
1
|
54
|
GGGGCAGTGGCAGGTGATC
|
0
|
1
|
7
|
140
|
GACCAGGGACACATTAGAT
|
0
|
0
|
1
|
37
|
GATCTAAATATGGCAGGCA
|
0
|
0
|
0
|
44
|
GAAGACAGACACGGAGATC
|
0
|
0
|
7
|
112
|
GTCAGCCAGCAAAGAAGTG
|
0
|
0
|
7
|
115
|
GTGGACTAGTATCGATATA
|
0
|
0
|
1
|
10
|
GTGAACCAAGTTACTAGCT
|
0
|
0
|
0
|
39
|
GGCCCGGTTAGGAACACTT
|
0
|
0
|
0
|
7
|
GGCCAAGAAGATACACTAG
|
0
|
0
|
1
|
65
|
GGACAGGGCAACAATGTGG
|
0
|
0
|
1
|
44
|
GGAAGATATGCTCATTCGC
|
0
|
0
|
0
|
24
|
GGAAGTGGTAAGGACTCCA
|
0
|
0
|
3
|
65
|
GGAGTCAGTACAGATACGA
|
0
|
0
|
1
|
22
|
GCGTTAATTAATCAACATC
|
0
|
0
|
0
|
12
|
GGCGTGATCGTATGCACCA
|
0
|
0
|
0
|
13
|
GAGAAGTCCAGATCTTTCC
|
0
|
0
|
5
|
95
|
GGACCCTGTCCCTAGAAGT
|
0
|
0
|
2
|
72
|
GAAAACTGTCAGACCCGAG
|
0
|
0
|
1
|
46
|
GCATTCCAAAGAAAAGAAT
|
0
|
0
|
7
|
167
|
GTCACATATCCTGGACACG
|
0
|
0
|
1
|
36
|
GTGTATAGTGCAAGACAAT
|
0
|
0
|
0
|
48
|
GTGAGAACGTTGGAGAGCC
|
0
|
0
|
1
|
59
|
GTTTTGATCGGAGAATCCA
|
0
|
0
|
1
|
31
|
GCAAACATCCAGAAAGTAA
|
0
|
0
|
1
|
93
|
GTCCAGGGGTTGGGGATCG
|
0
|
0
|
1
|
34
|
GGGCGTAGGTCAAAGCATG
|
0
|
0
|
0
|
17
|
GGGCGGGGTAAAGAAACCA
|
0
|
0
|
0
|
17
|
- Alignment between shRNA and human RefSeq was performed under conditions in which the indicated number of mismatches was allowed
-
aRepresents number of mismatched nucleotides