Table 1 Statistical significance of top two subnetworks. The table shows the q value of top two subnetworks identified using each scoring scheme according to the permuted genotype and PPI for WTCCC-T2D
From: MOBAS: identification of disease-associated protein subnetworks using modularity-based scoring
Scoring method | Size | q value in | q value in |
|---|---|---|---|
permuted genotype | permuted PPI networks | ||
NODE-BASED | 187 | 0.37 | 0.45 |
190 | 0.70 | 0.92 | |
LINEAR COMBINATION | 41 | 0.46 | 0.09 |
17 | 0.79 | 0.52 | |
MOBAS | 14 | 0.04 | < 0.01 |
14 | 0.05 | <0.01 |