Table 4 Comparison of network-based analysis approaches considering output information
From: Analysis of miRNA, mRNA, and TF interactions through network-based methods
Tool | Kind | Format | Link to external knowledge bases |
|---|---|---|---|
dChip-GemiNi [42] | Statistics of association. Visualization of network | Static | Not available |
MAGIA 2[44] | Statistics of association. Visualization of network | Dynamic and exportable in Cytoscape | Available |
mirConnX [47] | Statistics of association. Visualization of network | Dynamic | Available |
IntegraMiR [54] | Lists of associated mRNA-miRNA and TF | Static | Not available |