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Table 2 Comparison of network-based analysis approaches considering algorithmic approach and parameters of analysis

From: Analysis of miRNA, mRNA, and TF interactions through network-based methods

Tool

Algorithmic approach

Parameters

dChip-GemiNi [42]

Identification of SDE genes. Building and analysis of experimental network

Permutations

MAGIA 2[44]

Building and analysis of experimental network

Relatedness measure. Target databases

mirConnX [47]

Comparison of networks

Association measure for experimental data. Weight of networks

IntegraMiR [54]

Building and analysis of experimental network

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