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Table 1 Comparison of network-based analysis approaches considering availability and input data

From: Analysis of miRNA, mRNA, and TF interactions through network-based methods

Tool Implementation Input data Input data grouping Format of input data
dChip-GemiNi [42] Web server - R script mRNA-miRNA expression data grouped into two classes Two-class data. Paired and not paired Textual matrices
MAGIA 2[44] Web server mRNA-miRNA expression data. Time series and two-class data Two-class and time series data Textual matrices
mirConnX [47] Web server mRNA-miRNA expression data Two-class data Textual matrices. Only human and mouse
IntegraMiR [54] R script mRNA-miRNA expression data grouped into two classes Two-class data Textual matrices