Gene regulatory network inference by point-based Gaussian approximation filters incorporating the prior information

EURASIP Journal on Bioinformatics and Systems Biology

Table 3 Inferred results of the conventional filter and filters incorporating the prior information

		True positives #			False positives #			True negatives #			False negatives #
Filters	Min	Max	Avg	Min	Max	Avg	Min	Max	Avg	Min	Max	Avg
UKF	25	29	26.80	16	26	19.28	8	16	13.06	2	8	4.86
UKF_{p 1}	25	29	27.34	14	19	16.52	13	18	15.72	2	8	4.42
UKF_{p 2}	23	26	24.16	13	16	13.86	16	18	17.20	7	10	8.78
UKF_{p 3}	25	29	26.70	12	24	17.50	9	19	14.50	3	8	5.30
	True positive rate						False positive rate			Positive predictive rate
Filters	Min		Max		Avg		Min	Max	Avg	Min	Max	Avg
UKF	0.7576		0.9355		0.8472		0.5	0.7647	0.5955	0.5094	0.6279	0.5824
UKF_{p 1}	0.7576		0.9355		0.8614		0.4375	0.5935	0.5121	0.5778	0.6744	0.6239
UKF_{p 2}	0.6970		0.7879		0.7335		0.4194	0.5000	0.4462	0.5897	0.6667	0.6355
UKF_{p 3}	0.7576		0.9063		0.8348		0.3871	0.7273	0.5463	0.5294	0.6923	0.6049