Figure 1
From: Optimal reference sequence selection for genome assembly using minimum description length principle
MDL proposed scheme: The output of the system shows that the three components of the encoding scheme are separated from one another by “>”. The scheme follows the format “Model > Model given the Data > Data given the hypothesis”. In the genome assembly framework the scheme mentioned above translates into “Reference Sequence >Reference Sequence according to the set of reads > Set of reads according to the Reference sequence”. “Model given the Data” is identified using {−1, 0, 1}. “1”(s) represent the base locations where the reads are found. “0”(s) represents the locations which are not covered by any read. “−1”(s) represents the locations of the genome that are inverted.