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Table 3 Comparison of different methods for identification of CGIs

From: Identification of CpG islands in DNA sequences using statistically optimal null filters

Contig. Performace Methods
   Markov Chain IIR Filter Multinomial model CpGCluster SONF
NT_113952.1 Sn 0.8466 0.8656 0.4524 0.5046 0.8677
Length = 184355 Sp 0.8728 0.8320 0.2833 0.9995 0.4457
  CC 0.8621 0.8180 0.3609 0.6941 0.6192
  Acc 0.9955 0.9848 0.4948 0.9778 0.9878
NT_113954.1 Sn 0.3285 0.2226 0.0055 0.2986 0.5420
Length = 129889 Sp 0.3082 0.2585 0.0021 0.9946 0.2094
  CC 0.3152 0.2369 0.0040 0.4381 0.4382
  Acc 0.9940 0.9940 0.4989 0.9690 0.9894
NT_113958.2 Sn 0.4555 0.3561 0.2938 0.2716 0.8852
Length = 209483 Sp 0.4652 0.4439 0.0202 0.9994 0.2880
  CC 0.4527 0.3899 0.0119 0.4996 0.4954
  Acc 0.9849 0.9845 0.4960 0.9532 0.9705
NT_028395.3 Sn 0.5440 0.4200 0.0000 0.4489 0.8789
Length = 647850 Sp 0.8233 0.7590 0.0000 0.9947 0.4534
  CC 0.6667 0.5616 -0.0116 0.9753 0.6267
  Acc 0.9945 0.9932 0.8710 0.9532 0.9887