Table 6 Performance of the proposed approach for different parameters
From: Efficient Alignment of RNAs with Pseudoknots Using Sequence Alignment Constraints
Profile-csHMM (Proposed) | |||||||||
|---|---|---|---|---|---|---|---|---|---|
SN (%) | PPV (%) | Time (sec) | SN (%) | PPV (%) | Time (sec) | SN (%) | PPV (%) | Time (sec) | |
Corona_pk3 | 92.9 | 94.4 | 0.139 | 94.8 | 96.0 | 0.232 | 95.3 | 96.2 | 0.278 |
HDV_ribozyme | 93.2 | 95.7 | 0.131 | 94.2 | 95.9 | 0.133 | 94.5 | 95.5 | 0.147 |
Tombus_3_IV | 96.5 | 97.1 | 0.065 | 96.8 | 97.4 | 0.068 | 96.6 | 97.3 | 0.069 |
Flavi_pk3 | 94.8 | 97.2 | 0.329 | 94.5 | 96.8 | 0.351 | 94.5 | 96.8 | 0.362 |