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Table 4 Average sensitivity (SN) and positive predictive value (PPV) for RNA families with pseudoknots

From: Efficient Alignment of RNAs with Pseudoknots Using Sequence Alignment Constraints

 

Profile-csHMM

  
 

M -constraint

Original

Proposed

PSTAG

 

SN (%)

PPV (%)

SN (%)

PPV (%)

SN (%)

PPV (%)

SN (%)

PPV (%)

Corona_pk3

95.5

95.7

95.7

96.5

94.8

96.0

94.6

95.5

HDV_ribozyme

94.5

95.1

94.5

95.3

94.2

95.9

94.1

95.6

Tombus_3_IV

95.9

96.4

95.9

96.4

96.8

97.4

97.4

97.4

Flavi_pk3

94.6

96.5

94.5

96.4

94.5

96.8

N/A

N/A