Table 1 Misalignment probability in the seed regions of RNAs with 60% 
100% identity. The probability 
has been estimated for five different values of 
.
100% identity. The probability 
has been estimated for five different values of 
.From: Efficient Alignment of RNAs with Pseudoknots Using Sequence Alignment Constraints
| |||||
|---|---|---|---|---|---|
(7,3) | (9, 4) | (11, 5) | (13, 6) | (15, 7) | |
Error (%) | Error (%) | Error (%) | Error (%) | Error (%) | |
5S ribosomal RNA | 2.64 | 1.81 | 1.32 | 1.00 | 0.79 |
Transfer RNA | 3.60 | 2.46 | 1.80 | 1.44 | 1.28 |
